Managing the financial intricacies of nonprofit organizations presents countless challenges. Unlike traditional businesses, which focus on profit, nonprofits must prioritize transparency, compliance, and mission-driven accountability. This shift in priorities brings unique complexities when it comes to financial management. Nonprofits must not only ensure they are financially viable but also that they are accountable to donors, grantors, and regulatory bodies.
This is where nonprofit accounting software becomes a vital tool. These specialized solutions simplify fund accounting, streamline donor management, and enhance financial reporting to ensure compliance and transparency. Without the right software, nonprofits may struggle with tracking restricted funds, managing diverse revenue streams, and meeting audit requirements.
This blog explores the top 10 nonprofit accounting software in 2025, including detailed insights into their features and benefits to help organizations streamline financial management while focusing on their core mission.
According to a report by the Council of Nonprofit Organizations, around 45% of nonprofits listed financial sustainability as a significant challenge.
Top Accounting Software for Nonprofits
Here is a list of nonprofit accounting software for 2025 that helps businesses meet their complex financial needs and ensure long-term sustainability:
1. Aplos
Aplos is one of the best cloud-based accounting software for nonprofits, offering an intuitive platform for managing finances. It is tailored to meet nonprofit needs and simplify complex accounting tasks like fund tracking, donation management, and compliance with nonprofit accounting standards. Aplos provides detailed financial insights, empowering smaller to mid-sized organizations to make informed decisions. Its user-friendly interface ensures that even those without extensive accounting backgrounds can navigate and use the software effectively. Ideal for nonprofits seeking an affordable, easy-to-use solution, Aplos streamlines accounting processes while maintaining transparency and accountability, which is crucial for nonprofit financial management.
Key Features
Easy Financial Reporting: Streamlines the generation of crucial financial reports including balance sheets, income statements, and cash flow reports, ensuring compliance with nonprofit standards.
Donation Tracking: Efficiently tracks donor contributions, including one-time, recurring, and pledge donations, with automatic receipt generation and acknowledgment tools.
User-Friendly Interface: Designed for ease of use, Aplos requires minimal accounting knowledge, making it accessible to small nonprofit teams.
Tax-Ready Reporting: Automatically generates reports for tax filing, ensuring nonprofits are ready for year-end filings without the last-minute hassle.
Integrated Payroll: Offers integrated payroll solutions that ensure compliance with payroll taxes, reporting, and other payroll-related processes.
Mobile Access: Provides mobile access to nonprofit financial data, allowing team members to work on the go and access reports, donations, and budgets.
Pros
Intuitive interface, easy for beginners
Cost-effective for smaller organizations
Excellent customer support
Specifically designed for nonprofit needs
Cloud-based with easy access anywhere
How to choose the best nonprofit accounting companies in Canada?
When choosing the best nonprofit accounting companies in Canada, it is essential to consider firms with expertise in nonprofit accounting standards, including fund accounting and tax-exempt regulations. You should also look for those with a proven track record of working with similar organizations and providing tailored solutions, such as financial reporting, grant tracking, and compliance support. At the same time, prioritizing firms that offer scalable, cloud-based solutions, strong customer service, and transparent pricing is also important.
Blackbaud Financial Edge NXT is a comprehensive, cloud-based accounting software designed for nonprofit organizations, especially those with complex financial needs. It helps streamline fund accounting, manage grants and donations, and ensure compliance with nonprofit standards. Financial Edge NXT is ideal for medium to large nonprofits that require robust financial management and reporting capabilities. Features like customizable workflows, advanced reporting, and real-time financial insights enable organizations to make data-driven decisions and maintain transparency.
Key Features
Grant and Donation Tracking: Easily track grants, donations, and other funding sources, ensuring transparency and accountability.
Budgeting and Forecasting: Helps nonprofits create and manage budgets, track performance, and make strategic forecasts for better financial planning.
Audit-Ready Financials: Helps nonprofits stay audit-ready by providing comprehensive audit trails and ensuring accurate, transparent financial reporting.
Multi-Currency and Multi-Entity Support: Supports international organizations by enabling multi-currency transactions and managing multiple entities in one platform.
Comprehensive Compliance: Ensures compliance with nonprofit accounting standards and regulations to make it easier for businesses to stay in line with legal requirements.
Security and Data Protection: Provides advanced security features, such as role-based access controls and data encryption, etc, to safeguard sensitive financial data.
Pros
Strong grant and fund tracking capabilities
Real-time insights into financial health
Excellent customer support
Scalable for complex financial operations
3. DonorPerfect
DonorPerfect is a cloud-based donor management and fundraising software that helps nonprofit organizations manage donor relationships and streamline financial operations. Designed to simplify fundraising tasks, DonorPerfect provides tools for tracking donations, managing campaigns, and generating detailed reports. It also provides a comprehensive suite of features for donor engagement, such as customizable donation forms, communication tools, and automated thank-you letters. This software suits small to mid-sized nonprofits looking to grow their donor base and enhance engagement strategies.
Key Features
Donation Tracking: Helps organizations manage donations, pledges, and recurring payments with detailed tracking and reporting.
Customizable Reporting: Provides easy-to-create, customizable reports that meet specific nonprofit needs and ensure compliance with accounting standards.
Automated Acknowledgements and Receipts: Streamlines donor acknowledgment by automating thank-you notes, receipts, and tax-deductible donation receipts.
Event Management: Facilitates event planning and management, tracking event registrations, sponsorships, and donations.
Campaign Tracking: Monitors fundraising campaign performance, helping organizations track their progress and adjust necessary strategies for better outcomes.
Grant Management: Simplifies the process of tracking grants, including fund disbursements, reporting, and compliance requirements.
Pros
Strong focus on donor relationships and fundraising
Scalable for organizations of all sizes
Excellent customer service
Comprehensive reporting and analytics
Integration with popular accounting systems
4. Intacct Nonprofit
Intacct Nonprofit is a cloud-based accounting solution tailored to nonprofit organizations' unique needs. Designed to streamline financial processes, it offers robust tools for fund accounting, grant management, and financial reporting. Intacct Nonprofit is ideal for mid-sized to large nonprofits seeking an advanced system to handle complex accounting tasks while ensuring compliance with nonprofit regulations. Its real-time dashboards and customizable reports provide valuable insights into financial health, enabling better decision-making.
Key Features
Customizable Financial Structures: Allows nonprofits to customize the chart of accounts and financial structures to meet their unique reporting and accounting needs.
Cloud-Based Solution: Offers a secure, cloud-based platform for easy access to financial data anytime and from any device.
Integration Capabilities: Seamlessly integrates with other nonprofit management systems like CRM tools and donor management systems, enhancing overall operational efficiency.
Audit-Ready Reports: Ensures that all financial data is documented and easily accessible for audits, supporting transparency and accountability.
Collaboration Tools: Supports collaboration by allowing multiple users to securely access and work with the platform, improving teamwork and decision-making.
Automated Financial Reporting: Automates the creation of financial reports, reducing manual effort and ensuring accurate, up-to-date financial statements.
Pros
Scalable and highly customizable
Real-time financial insights and reporting
Excellent for managing complex finances
Strong customer support and resources
Fig 1: How to Choose a Perfect Accounting Software for Nonprofit Organizations
5. Kashoo
Kashoo is an easy-to-use accounting software that provides simple and intuitive tools for small nonprofits and businesses to manage their finances effectively. It is designed for organizations that need an easy-to-use platform for tracking income, expenses, and other basic accounting tasks. Kashoo is particularly suitable for nonprofits with minimal accounting expertise, offering automation features like expense categorization and invoice tracking to save time and reduce errors. By focusing on simplicity and accessibility, Kashoo allows nonprofits to maintain accurate records, generate reports, and ensure financial transparency.
Key Features
Real-Time Financial Reporting: Provides real-time insights into finances with customizable reports, helping nonprofits make informed decisions and stay on top of their financial health.
Cloud-Based Access: Ensures 24/7 access to financial data from anywhere, improving team collaboration and data accessibility.
Income and Expense Tracking: Tracks income and expenses straightforwardly, categorizing financial transactions for clearer reporting.
Automatic Bank Feeds: Imports bank transactions automatically, saving time on manual data entry and minimizing errors.
Invoicing and Billing: Allows nonprofits to create professional invoices for donors, sponsors, or clients with customizable templates.
Tax Management: Simplifies tax filing by categorizing expenses and generating reports necessary for tax preparation.
Pros
User-friendly and easy to navigate
Affordable for smaller nonprofits
Quick setup and intuitive features
Good customer support
Cloud-based with mobile access
6. Abila MIP Fund Accounting
Abila MIP Fund Accounting is a comprehensive solution for nonprofit organizations and government entities. It focuses on providing tools for managing complex fund accounting needs, such as tracking grants, programs, and multiple funding sources. The software is particularly well-suited for midsize to large nonprofits with intricate financial structures requiring robust reporting and compliance capabilities. With its modular design, Abila MIP allows organizations to customize the software based on their requirement as they grow.
Key Features
Budgeting and Forecasting: Helps nonprofits create detailed budgets and forecasts, supporting better financial planning and resource allocation.
Grant Management: Streamlines the tracking and management of grants, ensuring transparency and accountability throughout the grant lifecycle.
Real-Time Reporting: Provides customizable, real-time financial reporting, allowing nonprofits to make informed, data-driven decisions quickly.
Multi-Entity Support: Supports organizations with multiple locations or entities, offering seamless financial management across various divisions.
Audit-Ready Financials: Offers tools that help organizations prepare for audits with accurate, well-documented financial records.
Cloud and On-Premise Options: Provides flexibility with both cloud-based and on-premise deployment options, depending on the nonprofit's needs.
Pros
Strong security and compliance tools
Highly customizable reporting
Advanced analytics and real-time reporting
Excellent customer support and training
Fig 2: Accounting Challenges for Nonprofit Organizations
7. Nonprofit Plus
Nonprofit Plus is a cloud-based accounting software built on the Acumatica ERP platform, specifically tailored for nonprofit organizations. It focuses on addressing nonprofits' unique financial management challenges, such as fund accounting, grant tracking, and donor management. Nonprofit Plus is ideal for mid-sized to large organizations requiring advanced accounting solutions to manage multiple funding sources while ensuring compliance with regulatory standards. With robust reporting capabilities and customizable dashboards, Nonprofit Plus enables nonprofits to gain detailed insights into their financial health.
Key Features
Grant Management: Enables nonprofits to track grants and funding from multiple sources, providing transparency and accountability.
Customizable Dashboards: Provides flexible, real-time reporting and dashboards, allowing nonprofits to visualize financial data tailored to their specific needs.
Budgeting and Forecasting: Simplifies the creation of detailed budgets and projections, helping nonprofits plan for the future and ensure financial stability.
Cloud-Based Accessibility: Ensures secure, remote access to financial data from anywhere, enhancing collaboration among team members and stakeholders.
Customizable Reporting: Generates detailed, tailored reports that align with nonprofit financial management requirements, aiding in compliance and audit preparation.
Integration with Other Systems: Easily integrates with other tools, such as donor management systems, enhancing overall organizational efficiency.
Pros
Affordable and user-friendly
Includes all the features a small nonprofit might need
Real-time reporting and data tracking
Scalable for growing organizations
8. FinancialForce for Nonprofits
FinancialForce for Nonprofits is a cloud-based financial management solution built on the Salesforce platform that helps nonprofits streamline accounting processes and integrate financial data with other organizational functions. It caters to mid-sized to large nonprofits needing robust fund management, donor tracking, and grant reporting capabilities. By aligning with Salesforce's CRM tools, FinancialForce enables nonprofits to unify donor relations and financial data in one platform, fostering seamless communication and efficiency. Its scalability and flexibility make it one of the best choices for organizations looking to optimize financial operations while supporting their mission-driven goals.
Key Features
Unified Financial Management: Integrates financial and operational data, allowing nonprofits to align donor, project, and financial information in one platform.
Fund Accounting: Simplifies the tracking of restricted and unrestricted funds, ensuring compliance with nonprofit accounting standards.
Donor and Grant Management: Provides tools for managing donations, grants, and fundraising efforts, allowing nonprofits to track sources of income in real time.
Real-Time Reporting: Offers customizable dashboards and detailed reporting capabilities to provide real-time financial insights and improve decision-making.
Multi-Currency Support: Facilitates global operations with multi-currency and multi-tax support, ideal for nonprofits with international activities.
Customizable Workflows: Provides flexibility to tailor processes and workflows according to an organization's unique operational needs.
Pros
Seamless integration with Salesforce
Highly customizable to nonprofit needs
Ideal for large, growing organizations
Comprehensive reporting and analytics capabilities
Strong user community and support
9. Nonprofit Treasurer
Nonprofit Treasurer is a straightforward and user-friendly financial management tool designed for small nonprofit organizations and community groups. It offers essential features like tracking income, expenses, and budgets without the complexity of larger accounting systems. Nonprofit Treasurer is ideal for volunteer-run organizations or nonprofits with minimal accounting expertise that need a simplified platform to manage their finances transparently. With its focus on ease of use, the software supports organizations in maintaining accurate financial records, ensuring accountability to donors, and providing clear financial summaries for board meetings.
Key Features
Income and Expense Tracking: Helps organizations track and categorize donations, grants, and expenses with ease.
Budget Management: Enables nonprofits to set and monitor budgets, ensuring they stay within financial limits while aligning with their mission.
Financial Reporting: Provides clear, accessible financial reports to ensure transparency and accountability with stakeholders.
Bank Reconciliation: Streamlines the process of reconciling bank statements to the nonprofit's financial records, reducing manual errors.
Donor Acknowledgment: Simplifies the generation of personalized acknowledgment letters for donors, helping maintain strong relationships.
Check Writing: Allows nonprofits to manage and print checks directly from the software, improving efficiency and accuracy.
Pros
Affordable pricing for small nonprofits
Easy to use, no accounting background required
Comprehensive nonprofit-specific features
Quick setup and implementation
Reliable customer support
Case Study: Transforming Nonprofit Accounting with Corpay One
Nonprofit Bookkeeping, a firm based in Wisconsin, struggled with time-consuming manual processes for managing bill payments, tracking expenses, and obtaining approvals. These challenges created inefficiencies, slowed financial operations, and increased the risk of errors. The manual nature of these tasks also made it difficult to maintain accurate, real-time financial data, impacting their ability to focus on their clients' core missions.
Realizing the difficulties, the company implemented Corpay One to automate its accounting tasks and cut down to 6 hours of work each month for clients. Corpay One’s customizable workflows streamlined approval processes, while the integrated accounting system ensured cleaner, real-time books. This shift allowed clients to focus more on their missions and reduced internal risks through built-in audit trails. Overall, Corpay One helped improve efficiency, financial transparency, and internal controls, making operations smoother for nonprofits.
ClearView CRM is a nonprofit-centric customer relationship management (CRM) software designed to support robust fundraising and donor management efforts. It provides nonprofits with tools to manage donor relationships, track contributions, and streamline campaign planning while maintaining financial accountability. ClearView CRM is particularly suited for mid-sized to large nonprofits that require advanced donor segmentation, comprehensive reporting, and integration capabilities. Its cloud-based nature ensures accessibility across devices, enhancing collaboration among team members.
Key Features
Donor Management: Centralizes donor data to enhance relationship-building, segmentation, and retention strategies.
Fundraising Campaign Tools: Streamlines the planning and execution of campaigns with customizable workflows and performance tracking.
Comprehensive Reporting: Delivers in-depth analytics and real-time dashboards for better decision-making and donor insights.
Pledge Tracking: Simplifies management of multi-year pledges, ensuring accurate tracking and fulfillment reminders.
Event Management Integration: Facilitates seamless event coordination by linking donor participation and contributions to fundraising goals.
Customizable Interface: Adapts to organizational needs with configurable dashboards and tools tailored for specific nonprofit goals.
Pros
Highly customizable to fit nonprofit needs
Excellent reporting and analytical tools
Strong integration capabilities
Scalable for growing organizations
Cloud-based with mobile support
Difference Between Nonprofit Accounting and For-Profit Accounting
Key Aspects
Nonprofit Accounting
For-Profit Accounting
Primary Goal
Fulfills a mission or social cause. It focuses on accountability and transparency for donors and grant-makers.
Maximizes profits for owners and shareholders. It focuses on revenue generation and financial returns.
Financial Statements
Focuses on the statement of financial position, statement of activities, and statement of cash flows.
Focuses on Income Statement, Balance Sheet, and Cash Flow Statement.
Revenue Sources
Revenue comes from donations, grants, fundraising events, or government funding.
Revenue primarily comes from the sale of goods or services.
Profit Distribution
Reinvested back into the organization's mission. No distribution to owners.
Distributed to shareholders or owners as dividends or reinvested into the business.
Taxation
Typically exempt from income taxes but must maintain nonprofit status by adhering to tax laws.
Subject to corporate tax laws and must pay taxes on profits.
Accounting Method
Uses Fund Accounting to segregate resources based on their intended purpose (e.g., restricted funds, unrestricted funds).
Uses Accrual Accounting to recognize revenue and expenses when incurred, regardless of cash flow.
Financial Reporting Standards
Follows FASB (Financial Accounting Standards Board) guidelines for nonprofit organizations, such as FASB 116 and FASB 117.
Follows GAAP (Generally Accepted Accounting Principles) or IFRS (International Financial Reporting Standards) for profit-based businesses.
Fund Management
Requires specific tracking and reporting of restricted and unrestricted funds.
No restrictions on fund usage, and financial reporting focuses on profitability and growth.
External Stakeholders
Relies on donors, grantors, and volunteers and requires high financial transparency and accountability levels.
Focuses on shareholders, investors, creditors, and customers. Transparency is essential for investor confidence.
Budgeting
Emphasizes budgeting by program or project to ensure proper allocation of restricted funds.
Focuses on maximizing profit margins, controlling expenses, and achieving financial growth.
Conclusion
Nonprofit accounting requires an understanding of unique regulations, such as fund accounting, and compliance with IRS regulations for tax-exempt status. This is where internal teams often struggle to stay up-to-date on changes in tax laws, nonprofit reporting requirements, and best practices, leading to potential errors or oversights. Furthermore, they lack the time and tools necessary for complex financial tracking and reporting and juggle multiple revenue streams, such as grants, donations, and fundraising events, each requiring distinct management. This results in confusion, inefficiencies, and the risk of misallocating funds.
Delegating these accounting functions for nonprofits to experienced professionals helps businesses enhance financial accuracy and free up internal resources to focus on mission-driven activities.
At Invensis, we provide expert nonprofit accounting and bookkeeping services to charitable trusts, educational institutions, religious institutions, and social welfare institutions of different sizes and types. Our services include cash flow management, fund accounting, grant tracking and budgeting, nonprofit tax compliance, etc. Contact us now to maintain financial health, improve efficiency, and stay focused on their mission while we take care of the complexities of nonprofit accounting.
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